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Publication

Publications

( * : corresponding author;  † : joint first authors) 

  1.       Wu, T. Y., Li, Y. R., Chang, K. J., Fang, J. C., Urano, D., & Liu, M. J. (2024). Modeling alternative translation initiation sites in plants reveals evolutionarily conserved cis-regulatory codes in eukaryotes. Genome research, 34(2), 272–285.
    https://doi.org/10.1101/gr.278100.123
    • Highlighted  in Genome Research March 2024; 34 (3) The cover.      https://genome.cshlp.org/content/34/3.cover-expansion

  2. ​      Liu, M. J., Fang, J. C., Ma, Y., Chong, G. L., Huang, C. K., Takeuchi, A., Takayanagi, N., & Ohtani, M. (2024). Frontiers in plant RNA research in ICAR2023: from lab to innovative agriculture. Plant molecular biology, 114(3), 45.
    https://doi.org/10.1007/s11103-024-01436-x

  3. Fang, J. C., & Liu, M. J. (2023). Translation initiation at AUG and non-AUG triplets in plants. Plant Science, 335, 111822.
    https://doi.org/10.1016/j.plantsci.2023.111822

  4. Chiu, C. W., Li, Y. R., Lin, C. Y., Yeh, H. H., & Liu, M. J. (2022). Translation initiation landscape profiling reveals hidden open-reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus. The Plant Cell, 34(5), 1804-1821.
    https://doi.org/10.1093/plcell/koac019
    • Highlighted  in  “IN  BRIEF”  in  Plant  Cell,  34,  1441–1442.
      https://doi.org/10.1093/plcell/koac034 

  5. Wu, T. Y., Goh, H., Azodi, C. B., Krishnamoorthi, S., Liu, M. J., & Urano, D. (2021). Evolutionarily conserved hierarchical gene regulatory networks for plant salt stress response. Nature plants, 7(6), 787-799. 
    https://www.nature.com/articles/s41477-021-00929-7 

  6. Li, Y. R., & Liu, M. J. (2020). Prevalence of alternative AUG and non-AUG translation initiators and their regulatory effects across plants. Genome Research, 30(10), 1418-1433.|
    https://doi.org/10.1101/gr.261834.120

  7. Kailasam, S., Singh, S., Liu, M. J., Lin, C. C., & Yeh, K. C. (2020). A HemK class glutamine‐methyltransferase is involved in the termination of translation and essential for iron homeostasis in Arabidopsis. New phytologist, 226(5), 1361-1374.
    https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.16440 

  8. Chen, G. H., Liu, M. J., Xiong, Y., Sheen, J., & Wu, S. H. (2018). TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings. Proceedings of the National Academy of Sciences, 115(50), 12823-12828. https://www.pnas.org/doi/10.1073/pnas.1809526115 

  9. Liu, M. J. †*, Sugimoto, K., Uygun, S., Panchy, N., Campbell, M. S., Yandell, M., ... & Shiu, S. H. (2018). Regulatory divergence in wound-responsive gene expression between domesticated and wild tomato. The Plant Cell, 30(7), 1445-1460
    https://doi.org/10.1105/tpc.18.00194

    • Highlighted  in  “IN  BRIEF”  in  Plant  Cell  30,  1380. 
    https://doi.org/10.1105/tpc.18.00433 

  10. Liu, T. L., Newton, L., Liu, M. J., Shiu, S. H., & Farré, E. M. (2016). A G-box-like motif is necessary for transcriptional regulation by circadian pseudo-response regulators in Arabidopsis. Plant physiology, 170(1), 528-539.
    https://doi.org/10.1104/pp.15.01562 

  11. Liu, M. J., Seddon, A. E., Tsai, Z. T. Y., Major, I. T., Floer, M., Howe, G. A., & Shiu, S. H. (2015). Determinants of nucleosome positioning and their influence on plant gene expression. Genome research, 25(8), 1182-1195.https://genome.cshlp.org/content/25/8/1182.long 

  12. Liu, M. J., Wu, S. H., Wu, J. F., Lin, W. D., Wu, Y. C., Tsai, T. Y., ... & Wu, S. H. (2013). Translational landscape of photomorphogenic Arabidopsis. The Plant Cell, 25(10), 3699-3710.
    https://doi.org/10.1105/tpc.113.114769 

  13. Liu, M. J., Wu, S. H., Chen, H. M., & Wu, S. H. (2012). Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis. Molecular systems biology, 8(1), 566.
    https://doi.org/10.1038/msb.2011.97 

  14. Jiang, H. W., Liu, M. J. †, Chen, I. C., Huang, C. H., Chao, L. Y., & Hsieh, H. L. (2010). A glutathione S-transferase regulated by light and hormones participates in the modulation of Arabidopsis seedling development. Plant physiology, 154(4), 1646-1658. https://doi.org/10.1104/pp.110.159152 

  15. Chen, I. C., Huang, I. C., Liu, M. J., Wang, Z. G., Chung, S. S., & Hsieh, H. L. (2007). Glutathione S-transferase interacting with far-red insensitive 219 is involved in phytochrome A-mediated signaling in Arabidopsis. Plant Physiology, 143(3), 1189-1202.
    https://doi.org/10.1104/pp.106.094185 

News

2024 Taiwan outstanding women in science.

2022  Translation initiation landscape profiling reveals hidden open-reading frames required for the pathogenesis of tomato yellow leaf curl Thailand virus.

 

2022  MOST Ta-You Wu Memorial Award, Taiwan.

 

2021  EMBO Global Investigator.

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2021  Taiwan Foundation for Advancement of Outstanding Scholarship Young Scholars’ Creativity Award, Taiwan.

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2020  Taiwan Society of Plant Biologist 2020 Outstanding Young Scholar, Taiwan.

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2020  Prevalence of alternative AUG and non-AUG translation initiators and their regulatory effects across plants.

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